Thanks Scott.
Try setting the parameter Star peak response to 0.9. This will nearly double the number of stars detected, and the maps should generate OK. The other parameters don't seem to have much impact.
In addition, for measurement purposes, you may wish to crop off the edges where star detection density is lower due to lower SNR. The script will then give more representative statistics on the central image area, and further improve the likelihood that maps get generated. Try setting the parameter Subframe region to 500, 500, 4208, 2476 (left, top, width, and height). This will crop off 500 pixels on each side.
I don't know the answer to your question about leaving as RAW versus debayering darks, biases, and flats for BPP. Maybe someone else knows?
Mike