Hi Greg,
Yes, twice the green pixels as compared to red and blue indeed makes the green signal stronger. Also, the pixels are closer together so the resolution in green is higher than in the other colours. What OSC do you use? Lack of red signal may be because of a clipped red pass band. I have a Canon DSLR and the standard ones have IR-cut filters that strongly reduce transmission in H-alpha, which is where most of the red emission of nebulae is. I had it modded so it is more sensitive to H-alpha now.
As for compensating the green hue: in some cases this may be the chrominance noise in the background. Try zooming into your images a LOT so you see the individual pixels. If you see many green ones in the background and some red and blue ones then that is chrominance noise. You can reduce that with the SNCR process.
HTH, Wouter