Hi Steven,
Nothing has changed in StarAlignment's structure map generation for a long time. Those holes are normal because the stars in this image are large-scale structures. You can fix them by increasing SA's star detection scales.
To facilitate building the mask that you want, you can also reduce the image to one half its current size (with IntegerResample, for example, using a downsample factor of 2). Using StarAlignment for this task may work, but there are different options that can give you more control on the mask. With the downsampled image, you can use MultiscaleMedianTransform with the following parameters:
- 5 layers
- Layers 1, 2, 3 and R disabled
Then you can apply Convolution, STF AutoStretch and HistogramTransformation (by copying STF to HT first, then fine tuning clipping points) to build the mask quite easily. Once you have the mask this way, upsample it to the actual size of the image.