Looks like an artifact introduced due to variations in the centers of frames--that's a good thing (dithering) that allows removing bad pixels automatically. If that's the case, then those line represent frame edges--not sure why they are black, though. Nonetheless, one usually just crops away the edges. If you do a crop on one type of integrated frame (e.g., L) the identical crop should be done on the other integration as well (e.g., R,G,B,Ha). One way to do that is to drag the triangle off the dynamic crop process once you select the cropping area, and just drop the triangle on all other stacks. Of course, you want to crop sufficiently to remove the bad boarders from all frames, so be consider the most aggressive crop needed to remediate all of them.
AlexW