Thanks Rob - I appreciate your comments about it not being critical to have a balanced flat. Before I read your post, however, I'd gone off and manually balanced my master flat anyway and I'm reporting here on the results. I also think that I've solved the blotchiness problem in my stacked image, and report back here on that too in case it helps others.
Firstly, I’ve got rid of the blue cast that I was getting with the initial stacked image. I worked out that my LED light pad that I was using in my light box for flats must be a “warm white” rather than a “daylight” spectrum, ie. it’s quite yellow to the camera. So, blue was under-represented in my master flat and when that flat was used to calibrate my lights, less blue was removed than red and green, hence the blue cast in the stacked image.
To fix this, I debayered the greyscale master flat and then manually balanced the RGB histograms and then I converted that back to greyscale for use as a master. I've attached screenshots showing the before and after colours and histograms of the master flat (both were before conversion back to greyscale).
When I restacked my lights using this balanced flat, the stacked image had no blue cast. I've attached images of the original blue cast stack and the new stack resulting from using the balanced master flat.
Finally, (and this is why I started all this investigation!) I think I’ve now solved the blotchy background problem. I’ve experimented with the scale settings in the Local Normalisation step used during integration. By raising the scale from the default 128 to 512 I seem to have removed the blotchiness. (I don’t actually understand what the scale does BTW!)
I think the blotchiness was chromatic noise inherent in OSC cameras like mine (a Zwo ASI1600MC-C Pro) and it just happened that the default scale setting was clumping and exaggerating that noise rather than reducing it. The 512 scale seems to be best to reduce it.
The super-stretched just-stacked images attached show the comparisons between what I was getting with the default 128 scale and what I now get from the 512 scale.
The new image gives me something much better to work with.