Sadly I've reached a similar point and have not been able to adequately subtract the comet only integration from the aligned subframes. When the comet isn't perfectly aligned on one of the target frames, it will subtract the comet and the result will look like Marco's images above - I am stuck here. Adjusting the comet position manually is frustrating - adjusting one single X or Y parameter on the first frame will actually also adjust the location of the subtracted comet on the final target frame, even if the final target frame position is left unchanged. I'm not exactly sure how the alignment works, but manually inputting the coordinates precisely is not producing what I would expect to be the correct result. Will upload post an image when I get home..