I have found, especially with small stacks, that rejection settings strong enough to clean up satellite trails can result in rejection of good data in the rest of the image. My solution is to zap the satellite trails in the individual subs using PixelMath by drawing a white (value 1.0) line over the trail. These lines reject very easily with weaker rejection settings. It's not fun to do but I find it worth the effort.
Cheers,
Rick.