I have only used it a couple of times, but GradientMergeMosaic is the script you want to use. It is a two step process that I have used with a monochrome camera and RGB / Narrowband filters. The first step merges the panels for each filter and the second step produces a seamless, stacked image. The few times I have played with it, the mosaic it produced was perfect, I could not see where the panels merged or any color / gradient differences between them.
If I remember, I used a tutorial on the Light Vortex Astronomy site, which as usual was a detailed, step-by-step tutorial. I am sure there are resources here on the forum as well.
Joe