BPP is pretty damn powerful, and as Cdeselles mentions, results look quite good. I think the most obvious limitation of the script is that you can't choose more than one rejection algorithm, So, if for instance, you have many L frames where Linear Fit clipping would be appropriate, but you only have 9 frames of each color channel, where Average would be a better choice, you have to compromise on one.
You also can't use more than one master dark or bias at a time, and though the script is capable of matching different temp lights with matching reduction frames, it can only use one master bias or dark at a time. And, if these limitations impact your particular data, going the ImageIntegration route, does indeed makes more sense.