What makes M82 look better (smaller image scales) has a horrible impact on M81.
Am I using the right tool here or should I be looking for an alternative approach?
In my opinion, you have two options:
* Try to reach an equilibrium point to show both objects on the same image, processed as a unit. This means that neither M81 nor M82 will be shown in optimal conditions (for some definition of "optimal"), but the image as a whole will be optimal.
* Create two subimages, one of M81 and the other for M82, and process them separately. Once processed this way, the images will be incompatible in terms of information representation.
Other options, such as masking one of the objects or a divide-process-merge strategy, are unacceptable in my opinion. In general, when different objects in the same image are processed separately by applying arbitrary selection criteria, the result is not a valid astrophotograph. The reasons are the same that are applicable when somebody paints a mask by hand to sharpen here and there because it
looks better that way. The keyword here is
paint.