I have never analyzed the pattern other than determining the phase and amplitude.
Matt Longmire, of SBIG, says, "it is a square wave of unknown height and phase."
I just combined 60 flats and the bars were not visible. Also, both CCDOPS and CCDBand-Aid were unable to correctly determine the phase. This is usually an indication of no bars. Applying the CCDOPS fix, with the incorrect phase, added bars to the image.
I do not know why the bars don't appear in flats. My guess is that images, with very short exposures, hide the bars with noise. Maybe stacking two or 300 flats will make them visible. But, I suspect this will be well beyond the point of diminishing returns.
Cheers,
Bob