Hi Pfile,
I learned something new. I noticed that all of my sub-flats had hot pixels, even when they were calibrated. So, during my Master Flat creation, it was leaving all the hot pixels in the Master Flat even when I was calibrating it for substracting dark & bias noise. But when I changed the 'CFA pattern detection' from "Detect CFA" to "Force CFA", then it was removing all the hot pixels. Have you heard about this behavior before"? The only issue (and it's not a small one) is that when I integrate, all the colors are gone, so it seems that it has something to do with the CFA option. If you have any thoughts, please let me know...
M.