You should understand this part "did you not flatten this image". If you don't then please describe in more detail how you stacked in Nebulosity. In addition you should not do DDP in Nebulosity *at all* if you have PixInsight but besides that DBE works best with linear images. After DDP the image is no longer linear.
Sorry, with reference to Nebulosity I don't understand what "did you not flatten this image" means. I have never seen this option mentioned in the software.....unless its the "Save Stack" option??
First thing I did was align and combine my darks and flats. Then Preprocess B&W/RAW with my master Darks/Flats. Then did a Batch Demosaic + Square of the preprocessed lights. Finally did the align and combine of the lights from the previous process. Checked "save stack", used Translation as Alignment method and checked "Adaptive scale stack to 16 bits".
Saved the result as a fits file, did the Digital Development and saved. Opened up in Pix, Background Neut the DBE.
I know I don't haver to do Digital Development but I was testing something out in this particular case. The DBE issue happened after stcking with DeepSkyStacker as well with no processing whatsoever.
Thanks for taking the time to help.......setting the tolerance up so high goes against everything that I have read.