Very interesting thread. In my workflow I go from crop and DBE of the stacked images to linear fit of all RGB and L images before I go to the LRGB Procedures to make the RGB image. I then stretch with the script for masked stretch to get to 0.25 median. The histograms of the RGB and L images (of Ha) seem to overlap. This seems reasonable, right? If I do not do the linear fit, colors are definitely screwed up.
Is there any reason to use the AIP script for the combination of L or Ha with the RGB? I seem to like if better than just using the LRGB Procedure. I believe they said they do the process in several stages, masking.