I had a similar problem, and Juan diagnosed it as having to do with the new PSF-based alignment algorithm From his response:
new version of StarAlignment performs PSF fits by default for all detected stars. Because of this feature, the new version is much more demanding of good star shapes. Accurate PSF fitting is necessary for the new distortion correction algorithm, which aims at achieving centipixel registration accuracy, even under strong nonlinear distortions.
The problem with these images is that they are out of focus. As a result, PSF fits cannot be as reliable as the tool requires, and hence most stars are being rejected. To solve this problem you have to disable PSF fits, which returns the tool to a behavior similar to previous versions:
- Open the Star Detection section.
- Set Compute PSF fits to Never.