The 25 flats were first integrated using Average, Multiplicative and with the rejection set to Percentile Clipping, Equalize fluxes to create an uncalibrated MasterFlat.
Then the 25 light frames were integrated using a MasterBias, a MasterDark (uncalibrated) but its "Calibrate" box was checked during the integration and the uncalibrated MasterFlat from above with its "Calibrate" box checked during the integration.
This is shown in the attached screenshot.