Yes, you are right, extracting absolute photometry is a can of worms I may not want to get into. Although, perhaps extracting the R channel of my DSLR is not completely wrong if I take the R magnitudes of the stars, and use an average of many stars to "calibrate" the ADU to magnitudes conversion factor.
However, what I did was to compare the measured SNR (provided by the photometry package) as a function of the catalog star magnitude. That shows quite clearly the difference between a 2min exposure and a 1h one. No surprise there.
My idea behind all this, is that I want to explore how long I can expose before hitting the systematics (quality of the darks for example).
What I plan to do now is to get a really long exposure, and see if after 1,2,3,4 hours, I still improve in detectivity.