hi please note that changing the fits reader direction will flip the pattern. just so you aren't surprised later in case the reader direction changes. for instance, with the way BPP works, it can set the fits reader direction temporarily to what it wants to use, even though the reader direction in the format explorer for fits is set to the other direction.
because of the two green pixels sometimes the green channel looks stronger than the others, which is one reason you may need to unlink the channels in STF. the correct "cure" for this is of course to use BackgroundNeutralization and ColorCalibration to fix the channel weights.
rob