Thanks for the help...
The box I'm referring to is the dropdown box for the filter label in SGP. I won't call it a bug, but if you select a filter, then change it; the wrong filter name gets embedded in the file name and fits header.
When I bring that into batch preprocessing, PI puts it in the wrong channel even if I renamed the file. I'm thinking the solution is in the fits header. I just don't understand the spaces in the fits header for the filter. Ie 'red ' 'Green '.