Yes, use a master dark built from a library of darks of same temperature. But mostly because you will make much better use of the session's time.
On Rob's point on statistics, it made me scratch my head, but I will have to agree with the guy in cloudynights, as long as the number of lights and the number of darks used in building the master dark are equal. The way I see it is that the dark noise that is attenuated by stacking is random, and I assume spatially invariant across the sensor. So averaging out a set of darks before or after registration should give similar results, and the fixed pattern noise component would be equally well calibrated. Am I thinking this right?
Ignacio