Dear Eric,
Hi - I have no idea what is wrong, but can offer you some thoughts on how to investigate further.
Start by examining your raw Ha files - do they show these features? If so, then look for something that has happened to your equipment - is there e.g. condensation on the filters (I know the Pro model is supposed to be immune from this, and indeed its much better, but I still have had the occasional problem)?
If not, try looking at the calibrated files - if so, then there is a problem with your master dark, bias or flat frames (most likely flats since the darks and master should be the same as your OIII image).
If the calibrated files are also OK, then it must be something odd in the integration step.
Good luck - its frustrating since otherwise the image does look good.
Colin