I'm pretty sure this is a DCRAW issue. That is what the DSLR_Raw module is built on. I use 2 original Nex-5's and I have the opposite happen. In the Sony image software it reports my images as 4592x3056 yet PI has 4608x3072. Which is strictly correct I'm not sure but to be honest I don't care. That small change is not effecting my image that I can tell. I run all my calibration through PI so bias, darks, flats and lights have the same dimensions within the program.
Mike