I think it's related to the fact that the weight for the samples (fields Wr, Wg and Wg in the DBE interface) is zero or nearly zero. The weight can be increased by modifying the tolerance and/or shadows relaxation (but this affects all samples) or by activating the "Fixed" checkbox, which makes that sample have a weight of 1 (ie full weight), which I would not advise.
As for the reasons, I would bet it to have something to do with the deviations of each sample from the median of the image, or something like that.
Other "solution" would be to make more than one pass of DBE

.