Chris,
You will go a long way to reducing those bands with a large set of bias frames, I suggest at least 150 to make a master bias. (I don't use a DSLR much now, but increasing the bias subs really made a huge difference). Then use the canon de-banding script to reduce the remainder. Remember to rotate the image 90 degrees before using the script and re-rotate back after. I forget which way it works, so if it does not remove them, try the 90 degree rotation.
Note I say "reduce", there will always be some trace of them especially if you do a lot of stretching.
Mike