Hi Fabian,
Yes, this happens sometimes with synthetic star fields and the new star detection engine. I'll try to fix this problem as soon as possible.
The workaround is very easy: just add a small pedestal to the synthetic star field. For example, apply the following PixelMath expression:
$T + 0.05
with the rescale result option disabled. StarAlignment will work without problems.
Besides this, to use synthetic star fields as registration reference images I strongly recommend you generate them as CSV files with StarGenerator (output mode parameter). You can select a CSV file as the reference image in StarAlignment.