If you use the MENU: <File> <FITS Header> option, you can 'save' the FITS Header for an image as a 'process icon' on your workspace (and, therefore, it can also be saved to disk as well).
You can then re-apply that 'FITS Header' process icon to any other image, thus saving key data from image to image.
Of course, you CANNOT alter the fundamental FITS Header information for an image - as that is related, directly, to the physical image format itself.
So, perhaps you need to show us a FITS header from one of your component images, and then describe what part of that data you need to be re-incorporated into your subsequent, processed, images?