OK, this reply is less about making a master dark than using one in the calibration routine but this seems like a good place to post. The following makes no sense to me:
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The above would seem to indicate that one can bias and dark subtract the master flat before use. Bias I get, those are pretty much unchanging for a given camera so the one used elsewhere would be fine. Dark subtract makes little sense to me. Is it using the master dark frame specified for use with the light frame (object) data and scaling it? The length of the dark for the flat is almost never anywhere near that for the light (so one can't use that w/o scaling, thereby possibly introducing unnecessary error) and there is no place to specify a master dark frame for the flat or dark frame set (to generate a master dark) for the master flat.
In any case, better flats are generated by using flat specific darks and multiple component flats (which are easy, quick, and normally automated so why not do them?). Therefore the master flat would probably be created ahead of time and already dark and bias subtracted (in which case one would uncheck "calibrate" rendering this academic).
It seems to me that if one is going to offer the option to calibrate, one should also provide a space to input flat specific calibration frame(s) if one has them.
Of course, even more ideal would be a setup that allowed one to specify the all the component lights, darks and bias' in each section (master dark and master flat) so that the calibration process would calibrate and generate all the calibration frames from the multiple component files and then proceed to perform the calibration on the light frames as well. MaxIm does something like this (but with less control than I like). I assume one could use the image container and a set of processes to do this, but since this is such a common robot-like task and normally these items are all linked, it would seem to me a good idea to have this all in one step as a process.
So what it looks like to me is that, as is, one might as well separately generate and calibrate one's calibration frames (master darks and master flats) and just "uncheck". Is that correct?