Cannot prevent debayering RAW files during integration

[Buzz]

Happy New Year everybody.

I have a standard project that I use for calibration purposes, with preset processes for CCD and CMOS cameras. I have Fuji RAF RAW files, which I am trying to calibrate.

PI is behaving unexpectedly at present. I am trying to integrate bias/dark files. I have tried both raw and cfa input format hints, but in the first case, it generates RGB images (which according to the pop-up, should not be the case) and in the second, autorotates and I get a 'square' mono image.

As far as I know, I have not done anything to change the settings. Mac OSX 1.8.8-2

The strange thing is that the PreProcessing script is working, and only debayers prior to registration

[johnpane]

Try checking "No image flip" in RAW Format Preferences (accessible from Format Explorer).

[Buzz]

Many thanks John - that worked. It was just by luck that my previous CFA images had been taken in the same orientation and hence the auto rotate did not come into play.