I also use MLT for noise reduction with the linear data. However, when the data is quite noisy (like your data, and, much of mine) I find I need to reduce the Threshold and/or Amount. I notice you have 3 Iterations. I've never used more than 2, and, oftentimes only 1.
The reason for doing less noise reduction is, if I "over reduce" the noise at this stage it always causes "plastic noise" in the finished image.
Noise can't be eliminated, but, only reduced. In my experience, the worse the noise the less I can reduce it. In other words, with low noise data it is easy to do noise reduction while with noisy data it is difficult to do noise reduction without causing "plastic background".
Hope this makes sense.
Steve