Your mask put over a Gray image like L and Ha needs to be Gray also.
Means you got an RGB file back from Affinity and have to convert it to Grayscale with the process
ConverttoGrayscale. Uusing this image now as mask on the L and Ha will work properly.
Masks for gray images cant be RGB !
By the way what are you doing to your mask in Affinitiy what could not be done in PI
No need for conversion to tiff and software jumping if you have PI !!!
Gerald