Hola Francisco
The problem here is that ImageIntegration relies on FITS header keywords to learn the exposure time. Metadata on file format option dialogs refers to XML image metadata (which, by the way, isn't fully supported by PixInsight yet), but has nothing to do with FITS header keywords.
So what happens is just that your FITS files don't have the EXPTIME or EXPOSURE standard keywords, and hence ImageIntegration is unable to read the exposure time.
For performance reasons, ImageIntegration only works with image formats able to do incremental reading (read image files by chunks of contiguous pixel rows), and currently only the FITS format supports it. This is indeed a problem with DSLR images. The solution is a modification of the BatchFormatConversion script to generate EXPTIME keywords automatically from exposure time metadata read from DSLR raw images (perhaps taking into account ISO values, too?).
I'll try to make this for version 1.5.1. Sorry for the inconveniences. For now, the workaround is to create the EXPTIME keywords manually, but this is of course a lot of work. A better option is to group sets of images with the same exposure, integrate them apart, and then combine the results with PixelMath.