Adam, thank you for responding.
I'm confused too :-) The lack of clarity in my question shows how uncertain I am in my understanding of PI.
I was trying to say: I was attempting to do image integration the manual "long" way vs the script "short" way. I can not get the script to run because of an error message I unfortunately can not remember. This message is to the effect that PI can not find star pairs in the images, meaning there isn't any acceptable correspondence in the light images. I still have no answer for this error, and eventually have to get back to it.
At this time, I just successfully integrated the images the "long" way, so have made some real progress.
Below is notes I made to myself on the way through this (following instructions in "Inside Pixinsight"):
1. StarAlignment applied to original subs. Output is a set of modded lights with "_r" suffix added to names;
2. ImageIntegration applied to original subs. Result is one integrated image with stars not registered.
3. ImageIntegration applied to StarAlignment-ed ), the new "_r' files. Result is an integration of all the subs, with the stars
aligned. This is a good result, but it does not make use of my bias and flats.
3a.Attempt to integrate bias to make a Superbias. Result is:
*** Error: L:/astronomy working 9 nb filters/IC 5070 Pelican Nebula/bias use for Oiii too/B_1-4000s_2017-09-30_19-09-44_Bin1x1.fit: Zero or insignificant signal detected (empty image?)
<* failed *>
3b. Turn off "evaluate noise" set to "no normalization" and turn off "noise evaluation" and it works. Result is bias-integrated image.
4. Run ImageCalibration/Superbias. Result is superbias image. Checked with Ctrl+A. OK. Saved.
5. Clear bias files, load darks. All settings unchanged. Result darks-integrated image. Saved.
6. Start ImageCalibration, nec. prelim for flats. Load flat files. Load superbias. Load Master Dark saved from integrating darks. Check Calibrate.
apply. Some confusion here calibration vs integration and both done for flats!
7. PI says 41 successful image integrations done with lights. Wow! A first!
This is not really a question.. It's more a description of how I eventually made my way through image integration. The question re using the script to do this, is still there but on the back burner for now.
The integration vs calibration processes get confusing, as well as the way some types of files are presented on the desktop and must be saved, vs others that are automatically written out.
Clear?
NAH!
James