Thank you for uploading the files. I can integrate these FITS files without any problem on Windows 10, OS X 10.10 and 10.11, and Linux. I have integrated them multiple times with different parameters (just to make the test more intensive, since there is basically one way to integrate dark frames) without any issues.
Since I can't reproduce the problem, I have no idea why it's happening in your case. You can disable high-level parallel processing in ImageIntegration by setting the useFileThreads parameter to false. Click the Edit instance source code button, change the parameter value, and click the commit button.