Hi Jack!
First of all, thanks for using PI and for posting your suggestion here!
The next release of PixInsight, the standard edition, is going to be based upon a modular system, where you can plug in (or out) file formats, dynamical and static processes. The basic tools to create those modules are going to be freely avalaible, so the users may create their own processes or include more file formats. Right now this is possible only in the C++ language, with Microsoft .NET 2003/2005 and GCC compilers.
Having said that, as far as I'm aware, there is no need to another "plug in" to manage FITS files. PI fully met the standards, and has some very powerfull features incorporated. For example you can save/open fits files with an unlimited number of channels (RGB+alpha channels). If you have some grayscale images, and want to combine them into a color one, you need to use the ImportChannels process. Select the color model, and the desired images, and apply it to a color image (you may create a new one, or convert one of your grayscale ones into a RGB image).
Now, about your second suggestion: Take a look into the Preferences (Edit>Preferences). There is an item where you are allowed to change the color of the backgroung of the main window's workspace. You may make use of process icons to quickly change into different configurations. Also there is an option under the Windows menu that allows you to hide the tool bars. In the comercial release will be avalaible a full screen mode that will simplify a bit all of this, and give you a "cleaner" view.
Thanks you for your feedback!