Thanks for your responses. Unfortunately your responses don't agree, so it would be nice if someone else, that knew the right approach that I should take, would chime in.
And don't waste your breath saying I should change the camera orientation setting in my DSLR because I'm done with DSLR's since I got an Atik 383L+ CCD, I am just trying to knock out some of these hours and hours worth of data taken with the DSLR. And I know I changed that setting right when I got the camera, but didn't know why some pictures were coming back in portrait.