Actually, after a closer code inspection, it has been relatively easy to implement:
(http://forum-images.pixinsight.com/20140408/II/II-new-parameters.png)
The new report range rejection and map range rejection parameters allow you to control inclusion of range rejected pixels in console rejection counts and rejection maps, respectively. Report range rejection is disabled by default. Let me know if this is what you expected.
The other bug that you have mentioned is also fixed. Everything will be available in the next version.